Dude, let me break it down to you Barney style.Makes zero sense
You have a bachelor's degree in "history" with a dog sh*t GPA, and are getting ready to complete a master's degree in "communications" - one that you've been working on for 4 years - with a high GPA. And, aside from your active duty Navy time, have about 4 years of entry-level IT work experience (those two jobs you had in undergrad are not helping).
You can split hairs all day long about how you "got screwed", but there is no way in hell that you will get selected for either IP or Intel with your current background. Your chances are below zero, especially if you do not receive a favorable endorsement by the NIFR OIC.
My best advice to you if you want to be an Intel or other Reserve officer, is to enlist in the Navy Reserve into the rate that closely aligns with the type of officer you want to be (e.g., IT/IP, IS/Intel, CT/CW, etc.), get a couple of years under your belt, obtain certifications and experience relevant to the designator for which you are applying, and re-apply.