I understand you may be frustrated by the sense that waivers were not handed out fairly or by merit. If you are close to busting the 36 month deadline for your 3I1 PQS, you can advocate up your chain of command for a 12 month extension.
It should be no factor, however, if you end up doing a 5 week training in Dam Neck instead of an ad hoc 2 week training online. There are a lot worse situations out there in the Navy and the world. If you end up at Dam Neck, do your best, use the time to improve any weak points, and help fellow JOs around you do the same. Consider having a mindset that the goal is not to meet the minimum but rather to get better every day, for the benefit of sailors you’ll lead and operators/ decision makers you’ll support.